Software Publications
Profile

Assistant Professor
Martin Engqvist

Department of Biology and Biological Engineering,
Chalmers University of Technology,
Kemivägen 10, SE-412 96 Göteborg, Sweden

Phone: +46(0)31 772 8171
Fax: +46(0)31 772 3801
E-mail: martin.engqvist [at] chalmers.se
Office: Chemistry building, Room 2024

 
Degrees
2010 Ph.D. summa cum laude in Botany, University of Cologne, Germany
2006 M.Sc. in Molecular Biology, Lund University, Sweden
Positions
2017 – Assistant Professor, Chalmers University of Technology, Sweden
2016-2017 Senior Researcher, University of Gothenburg, Sweden
2015-2016 Senior Scientist in Trait Knowledge, BASF CropDesign, Belgium
2014-2015 Postdoctoral scholar, Chalmers University of Technology, Sweden
2011-2014 Postdoctoral scholar, California Institute of Technology, USA
2010 Postdoctoral scholar, University of Cologne, Germany
2006-2010 PhD student,  Max Planck Institute for Plant Breeding and University of Cologne, Germany
2005 Research assistant, University of Missouri-St. Louis, USA
Education
2006 Exchange studies through ERASMUS, University of Cologne, Germany
2006 Research project, Lund University, Sweden
2004-2005 Exchange studies through MAUI, University of Missouri-St. Louis, USA
2002-2006 Studies in the molecular biology program, Lund University, Sweden
Positions of trust
2016- Member of the Gothenburgs Bioinformatic Network (GOTBIN) organizing committee, Sweden
2008 Co-organizer of the 1st Joint Retreat of Ph.D. Students in Experimental Plant Sciences in Wageningen, The Netherlands
2007-2008 Ph.D. student representative at the Max Planck Institute for Plant Breeding, Germany
2006 Mentor during orientation activities for the international students at Lund University, Sweden
2004 Mentor during orientation activities for the chemistry students at Lund University, Sweden
Peer-reviewed publications
As of April 30th 2017 (Google Scholar)
Citations: 606
h-index: 10
Original research articles: 17
Research review articles: 2
Book chapters: 1
Software
ANT - Software for generating and evaluating degenerate codons for natural and expanded genetic codes (Python).
DNApy - Code for DNA plasmid editing (Python).
colcol - Code for dealing with color conversions and generating publication-quality color scales (Python).
wsvg - A light wrapper around the svg (scalable vector graphics) format, for scripting svg files (Python).
reproducible research - Provides folder structure and conventions for new research projects, with the aim of making analysis reproducible.
reproducible reports - A template library for use in making research reports/grant proposals follow standard guidelines.
Grants, Fellowships and Prizes
2012-2014
Dow-Resnick Research Grant, USA
2012
NASA Ames Research Grant, USA
2011-2014
Postdoctoral Research Fellowship, Deutsche Forschungsgemeinschaft, Germany
2010 Reinhold von Sengbusch Prize, Germany
2009 Honorary Stipend, Stiftelsen Markussens Studiefond, Sweden
2006-2009
Graduate Research Fellowship, International Max Planck Research School graduate program, Germany
Memberships in Societies
2012- German Society of Biochemistry and Molecular Biology (GBM)
2012- Federation of European Biochemical Societies (FEBS)
2012- International Union of Biochemistry and Molecular Biology (IUBMB)
2012- European Federation of Biotechnology (EFB)
2009- Lund University alumni
 

 

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